Hello, Linker errors using --with-hdf5: libtool: link: cc -O2 -pipe -I/wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/slurm -I/usr/local/include -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing -fstack-protector -o sh5util sh5util.o -Wl,-rpath=/usr/local/lib/slurm -Wl,--export-dynamic -L/usr/local/lib ../.libs/libhdf5_api.a -lsysinfo -lkvm -lm -ldl -lz -lsz -lhdf5 -lhdf5_hl -pthread sh5util.o: In function `main': /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:210: undefined reference to `info' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:230: undefined reference to `error' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:215: undefined reference to `info' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:220: undefined reference to `info' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:226: undefined reference to `info' ... Full build log: http://pkg.awarnach.mathstat.dal.ca/data/11amd64-default/2018-09-29_12h05m03s/logs/errors/slurm-wlm-18.08.0.log The build progresses further using --without-hdf5, but hits other linker errors: libtool: link: cc -O2 -pipe -I/wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/slurm -I/usr/local/include -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing -fstack-protector -o sacct options.o print.o process.o sacct.o -Wl,-rpath=/usr/local/lib/slurm -Wl,--export-dynamic -L/usr/local/lib -lsysinfo -lkvm -ldl -pthread options.o: In function `get_data': /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/sacct/options.c:567: undefined reference to `slurmdb_jobcomp_jobs_get' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/sacct/options.c:570: undefined reference to `slurmdb_jobs_get' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/sacct/options.c:585: undefined reference to `list_iterator_create' /wrkdirs/usr/ports/sysutils/slurm-wlm/work/slurm-18.08.0/src/sacct/options.c:621: undefined reference to `slurmdb_ave_tres_usage' ... Full build log: http://pkg.awarnach.mathstat.dal.ca/data/11amd64-default/2018-09-29_12h07m28s/logs/errors/slurm-wlm-18.08.0.log Configuring with --without-shared-libslurm allows the build to progress further, but it then hits an 'undeclared identifier' error. srun_job.c:1349:44: error: use of undeclared identifier '__environ' env_array_merge(&job->env, (const char **)__environ); Full build log: http://pkg.awarnach.mathstat.dal.ca/data/11amd64-default/2018-09-29_12h09m40s/logs/errors/slurm-wlm-18.08.0.log Sorry I can't offer patches. I tried, but had no luck. If there is anything I can test, please let me know.
Created attachment 7918 [details] srun_job: Fix FreeBSD build by defining environ and __environ 1. glibc has `extern char **environ;` in <unistd.h>, but hidden behind `#ifdef __USE_GNU`. Since libc has the `environ` symbol defined, simply defining it here should work. Guard it behind #ifdef __FreeBSD__ to ensure this does not cause problems elsewhere. 2. #define __environ environ While this fixes the build, I am not familiar enough to do sufficient run-time tests. If there are specific tests you recommend, just let me know.
This patch is included in bug 8602 along with several others. *** This ticket has been marked as a duplicate of ticket 8602 ***
