Hey there, I like to tinker with HPC stacks in Linux Containers (e.g. FOSDEM: https://www.youtube.com/watch?v=mKM8GrBn5gg) and I recently move my Containers from Fedora to the much smaller Alpine Linux (Dockers official images are moved there as well). Trying to compile it using this Recepie (https://github.com/qnib/alpn-slurm/blob/master/Dockerfile) I got that: ``` In file included from log.c:73:0: /usr/include/sys/poll.h:1:2: warning: #warning redirecting incorrect #include <sys/poll.h> to <poll.h> [-Wcpp] #warning redirecting incorrect #include <sys/poll.h> to <poll.h> ^ log.c:78:24: fatal error: sys/unistd.h: No such file or directory compilation terminated. Makefile:902: recipe for target 'log.lo' failed ``` I googled and found this: https://github.com/openwrt/packages/issues/1376 So I changed this line... ``` bash-4.3# cd /opt/slurm/ bash-4.3# grep sys/unistd -r * src/common/log.c:#include <sys/unistd.h> ``` ... to that line... ``` bash-4.3# grep unistd.h src/common/log.c #include <unistd.h> ``` Which continues first, but fails here: ``` make[5]: Entering directory '/opt/slurm/src/plugins/accounting_storage/filetxt' /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -fno-gcse -Wall -g -O0 -fno-strict-aliasing -MT accounting_storage_filetxt.lo -MD -MP -MF .deps/accounting_storage_filetxt.Tpo -c -o accounting_storage_filetxt.lo accounting_storage_filetxt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -fno-gcse -Wall -g -O0 -fno-strict-aliasing -MT accounting_storage_filetxt.lo -MD -MP -MF .deps/accounting_storage_filetxt.Tpo -c accounting_storage_filetxt.c -fPIC -DPIC -o .libs/accounting_storage_filetxt.o In file included from ../../../../src/common/slurm_xlator.h:426:0, from accounting_storage_filetxt.c:42: ../../../../src/common/callerid.h:51:62: error: unknown type name 'ino_t' extern int callerid_find_inode_by_conn(callerid_conn_t conn, ino_t *inode); ^ ../../../../src/common/callerid.h:52:63: error: unknown type name 'ino_t' extern int callerid_find_conn_by_inode(callerid_conn_t *conn, ino_t inode); ^ ../../../../src/common/callerid.h:53:50: error: unknown type name 'ino_t' extern int find_pid_by_inode (pid_t *pid_result, ino_t inode); ^ Makefile:593: recipe for target 'accounting_storage_filetxt.lo' failed make[5]: *** [accounting_storage_filetxt.lo] Error 1 make[5]: Leaving directory '/opt/slurm/src/plugins/accounting_storage/filetxt' Makefile:512: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/opt/slurm/src/plugins/accounting_storage' Makefile:541: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/opt/slurm/src/plugins' Makefile:517: recipe for target 'all-recursive' failed make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory '/opt/slurm/src' Makefile:700: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/opt/slurm' Makefile:582: recipe for target 'all' failed make: *** [all] Error 2 ``` And now I am stuck... :) How to start with docker: https://github.com/qnib/alpn-slurm/blob/master/README.md
I fetched master and ran into this error: ``` make[5]: Entering directory '/opt/slurm-master/src/plugins/switch/cray' /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-cookies.lo -MD -MP -MF .deps/switch_cray_la-cookies.Tpo -c -o switch_cray_la-cookies.lo `test -f 'cookies.c' || echo './'`cookies.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-cookies.lo -MD -MP -MF .deps/switch_cray_la-cookies.Tpo -c cookies.c -fPIC -DPIC -o .libs/switch_cray_la-cookies.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-cookies.lo -MD -MP -MF .deps/switch_cray_la-cookies.Tpo -c cookies.c -o switch_cray_la-cookies.o >/dev/null 2>&1 mv -f .deps/switch_cray_la-cookies.Tpo .deps/switch_cray_la-cookies.Plo /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-gpu.lo -MD -MP -MF .deps/switch_cray_la-gpu.Tpo -c -o switch_cray_la-gpu.lo `test -f 'gpu.c' || echo './'`gpu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-gpu.lo -MD -MP -MF .deps/switch_cray_la-gpu.Tpo -c gpu.c -fPIC -DPIC -o .libs/switch_cray_la-gpu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-gpu.lo -MD -MP -MF .deps/switch_cray_la-gpu.Tpo -c gpu.c -o switch_cray_la-gpu.o >/dev/null 2>&1 mv -f .deps/switch_cray_la-gpu.Tpo .deps/switch_cray_la-gpu.Plo /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-iaa.lo -MD -MP -MF .deps/switch_cray_la-iaa.Tpo -c -o switch_cray_la-iaa.lo `test -f 'iaa.c' || echo './'`iaa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-iaa.lo -MD -MP -MF .deps/switch_cray_la-iaa.Tpo -c iaa.c -fPIC -DPIC -o .libs/switch_cray_la-iaa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-iaa.lo -MD -MP -MF .deps/switch_cray_la-iaa.Tpo -c iaa.c -o switch_cray_la-iaa.o >/dev/null 2>&1 mv -f .deps/switch_cray_la-iaa.Tpo .deps/switch_cray_la-iaa.Plo /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-pe_info.lo -MD -MP -MF .deps/switch_cray_la-pe_info.Tpo -c -o switch_cray_la-pe_info.lo `test -f 'pe_info.c' || echo './'`pe_info.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-pe_info.lo -MD -MP -MF .deps/switch_cray_la-pe_info.Tpo -c pe_info.c -fPIC -DPIC -o .libs/switch_cray_la-pe_info.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-pe_info.lo -MD -MP -MF .deps/switch_cray_la-pe_info.Tpo -c pe_info.c -o switch_cray_la-pe_info.o >/dev/null 2>&1 mv -f .deps/switch_cray_la-pe_info.Tpo .deps/switch_cray_la-pe_info.Plo /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-scaling.lo -MD -MP -MF .deps/switch_cray_la-scaling.Tpo -c -o switch_cray_la-scaling.lo `test -f 'scaling.c' || echo './'`scaling.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-scaling.lo -MD -MP -MF .deps/switch_cray_la-scaling.Tpo -c scaling.c -fPIC -DPIC -o .libs/switch_cray_la-scaling.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-scaling.lo -MD -MP -MF .deps/switch_cray_la-scaling.Tpo -c scaling.c -o switch_cray_la-scaling.o >/dev/null 2>&1 mv -f .deps/switch_cray_la-scaling.Tpo .deps/switch_cray_la-scaling.Plo /bin/bash ../../../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-switch_cray.lo -MD -MP -MF .deps/switch_cray_la-switch_cray.Tpo -c -o switch_cray_la-switch_cray.lo `test -f 'switch_cray.c' || echo './'`switch_cray.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../../.. -I../../../../slurm -I../../../.. -I../../../../src/common -g -O2 -Wall -g -O0 -fno-strict-aliasing -MT switch_cray_la-switch_cray.lo -MD -MP -MF .deps/switch_cray_la-switch_cray.Tpo -c switch_cray.c -fPIC -DPIC -o .libs/switch_cray_la-switch_cray.o switch_cray.c:53:26: fatal error: linux/limits.h: No such file or directory compilation terminated. Makefile:658: recipe for target 'switch_cray_la-switch_cray.lo' failed make[5]: *** [switch_cray_la-switch_cray.lo] Error 1 make[5]: Leaving directory '/opt/slurm-master/src/plugins/switch/cray' Makefile:512: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/opt/slurm-master/src/plugins/switch' Makefile:543: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/opt/slurm-master/src/plugins' Makefile:517: recipe for target 'all-recursive' failed make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory '/opt/slurm-master/src' Makefile:696: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/opt/slurm-master' Makefile:580: recipe for target 'all' failed make: *** [all] Error 2 bash-4.3# ```
OK, needed the linux-headers. But now I am at a real dead-end, since it seems I need >=glibc-2.7, while Alpine uses musl-libc. :) ``` /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -g -O0 -fno-strict-aliasing -export-dynamic -o sacct options.o print.o process.o sacct.o ../../src/db_api/libslurmdb.o -ldl libtool: link: gcc -g -O2 -Wall -g -O0 -fno-strict-aliasing -o sacct options.o print.o process.o sacct.o ../../src/db_api/libslurmdb.o -Wl,--export-dynamic -ldl ../../src/db_api/libslurmdb.o: In function `slurm_find_group_user': /opt/slurm/src/common/uid.c:315: undefined reference to `getgrent_r' ../../src/db_api/libslurmdb.o: In function `_find_match_in_tcp_file': /opt/slurm/src/common/callerid.c:177: undefined reference to `inet_nsap_addr' /opt/slurm/src/common/callerid.c:179: undefined reference to `inet_nsap_addr' collect2: error: ld returned 1 exit status make[3]: *** [sacct] Error 1 Makefile:562: recipe for target 'sacct' failed make[3]: Leaving directory '/opt/slurm/src/sacct' Makefile:517: recipe for target 'all-recursive' failed make[2]: Leaving directory '/opt/slurm/src' make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 Makefile:696: recipe for target 'all-recursive' failed make[1]: Leaving directory '/opt/slurm' Makefile:580: recipe for target 'all' failed The command '/bin/sh -c cd /opt/slurm/ && make && make install' returned a non-zero code: 2 ```
Is there no way to compile SLURM on Alpine?
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